PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507578.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20574.7 Da    PI: 8.0345
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.62.5e-212067249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ++n+qvtfskRr g++KK +EL+vLC++++a+++fs+ +kl+ +
  XP_004507578.1 20 KLEKNTNKQVTFSKRRSGLFKKTSELCVLCNVDAAIVVFSPADKLFCF 67
                    56899***************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-291170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.881171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-261282IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-201333IPR002100Transcription factor, MADS-box
PfamPF003191.4E-212167IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-203348IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-204869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDIFKQKKKN TGRKKIEIKK LEKNTNKQVT FSKRRSGLFK KTSELCVLCN VDAAIVVFSP  60
ADKLFCFGQP NTDAIINSYI NGTTEFETSK SIGKSISYEE HNTEYEKAIQ NLEFEKKKLE  120
EYENLTKVWN SGEWWNDPID EMSIDQLEQF MASIYELRRK LVDRAHEVVM MLPMLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-141279269Myocyte-specific enhancer factor 2B
1tqe_R1e-141279269Myocyte-specific enhancer factor 2B
1tqe_Q1e-141279269Myocyte-specific enhancer factor 2B
1tqe_P1e-141279269Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507578.11e-129PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A072VC911e-81A0A072VC91_MEDTR; Agamous-like MADS-box protein AGL62
STRINGGLYMA20G27361.12e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-33AGAMOUS-like 62